SRX253098
GSM1103355: RUNX1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Runx1

Cell type

Cell type Class
Blood
Cell type
Megakaryocytes
MeSH Description
Very large BONE MARROW CELLS which release mature BLOOD PLATELETS.

Attributes by original data submitter

Sample

GEO Accession
GSM1103355
strain/background
C57BL
genotype
WT
cell type
megakaryocyte cells
chip antibody
anti-Runx1

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
202436468
Reads aligned (%)
74.8
Duplicates removed (%)
59.5
Number of peaks
4629 (qval < 1E-05)

mm9

Number of total reads
202436468
Reads aligned (%)
74.5
Duplicates removed (%)
59.4
Number of peaks
4601 (qval < 1E-05)

Base call quality data from DBCLS SRA