SRX252735
Histone H3K4me3 ChIP-Seq of CD4 Primary Cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
CD4+
NA
NA

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
FHCRC HEIMFELD
BIOMATERIAL_TYPE
Primary Cell
CELL_TYPE
CD4 Primary Cells
MARKERS
CD4+
DONOR_ID
RO 01679
DONOR_AGE
year 21
DONOR_HEALTH_STATUS
NA
DONOR_SEX
male
DONOR_ETHNICITY
Caucasian
PASSAGE_IF_EXPANDED
NA
sample_term_id
CL_0000492

Sequenced DNA Library

library_name
Histone.DS21776
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
49327006
Reads aligned (%)
90.7
Duplicates removed (%)
21.7
Number of peaks
32135 (qval < 1E-05)

hg19

Number of total reads
49327006
Reads aligned (%)
90.3
Duplicates removed (%)
22.3
Number of peaks
32074 (qval < 1E-05)

Base call quality data from DBCLS SRA