Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Digestive tract

Cell type

Intestine, Small

MeSH Description

The portion of the GASTROINTESTINAL TRACT between the PYLORUS of the STOMACH and the ILEOCECAL VALVE of the LARGE INTESTINE. It is divisible into three portions: the DUODENUM, the JEJUNUM, and the ILEUM.

Sample

MOLECULE

genomic DNA

DISEASE

None

BIOMATERIAL_PROVIDER

Shin Lin, Stanford University

BIOMATERIAL_TYPE

Primary Tissue

TISSUE_TYPE

Small Intestine

TISSUE_DEPOT

N/A

COLLECTION_METHOD

Autopsy

DONOR_ID

STL003

DONOR_AGE

34

DONOR_HEALTH_STATUS

polysubstance abuse (NO diabetes, hypertension, coronary artery disease, cancer)

DONOR_SEX

male

DONOR_ETHNICITY

Caucasian

sample_term_id

UBERON_0002108

Sequenced DNA Library

library_name

DGF.DS20770

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

417813293

Reads aligned (%)

84.7

Duplicates removed (%)

35.9

Number of peaks

183906 (qval < 1E-05)

hg19

Number of total reads

417813293

Reads aligned (%)

84.2

Duplicates removed (%)

36.8

Number of peaks

182803 (qval < 1E-05)