Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Blood
Cell type
CD3+
NA
NA

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
FHCRC HEIMFELD
BIOMATERIAL_TYPE
Primary Cell
CELL_TYPE
CD3 Primary Cells
MARKERS
CD3
DONOR_ID
CB6 1-4-2011
DONOR_AGE
NA
DONOR_HEALTH_STATUS
NA
DONOR_SEX
Unknown
DONOR_ETHNICITY
NA
PASSAGE_IF_EXPANDED
NA
sample_term_id
CL_0000084

Sequenced DNA Library

library_name
DGF.DS17706
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
601338186
Reads aligned (%)
82.9
Duplicates removed (%)
50.2
Number of peaks
109482 (qval < 1E-05)

hg19

Number of total reads
601338186
Reads aligned (%)
82.4
Duplicates removed (%)
51.4
Number of peaks
109791 (qval < 1E-05)

Base call quality data from DBCLS SRA