Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Blood

Cell type

Monocytes-CD14+

Tissue

monocytes

Lineage

mesoderm

Description

Monocytes-CD14+ are CD14-positive cells from human leukapheresis production, from donor RO 01746 (draw 1 ID is RO 01746, draw 2 ID is RO 01826), newly promoted to tier 2: not in 2011 analysis

Sample

MOLECULE

genomic DNA

DISEASE

None

BIOMATERIAL_PROVIDER

FHCRC HEIMFELD

BIOMATERIAL_TYPE

Primary Cell

CELL_TYPE

CD14 Primary Cells

MARKERS

CD14+

DONOR_ID

RO 01679

DONOR_AGE

year 21

DONOR_HEALTH_STATUS

NA

DONOR_SEX

male

DONOR_ETHNICITY

Caucasian

PASSAGE_IF_EXPANDED

NA

sample_term_id

CL_0001054

Sequenced DNA Library

library_name

DGF.DS17215

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

593492997

Reads aligned (%)

86.2

Duplicates removed (%)

49.3

Number of peaks

159192 (qval < 1E-05)

hg19

Number of total reads

593492997

Reads aligned (%)

85.7

Duplicates removed (%)

50.0

Number of peaks

158356 (qval < 1E-05)