Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Cell line
Cell type
Kc167
Source
e/se
Developmental Stage
dorsal closure stage

Attributes by original data submitter

Sample

source_name
female embryonic cells
cell type
embryonic (established from 6-12hours embryo)
cell line
Kc167
chip antibody
CTCF (Bushey et al., Genes & Dev. 2009)
treatment
Heat shocked

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

dm3

Number of total reads
20077304
Reads aligned (%)
56.7
Duplicates removed (%)
28.6
Number of peaks
6644 (qval < 1E-05)

dm6

Number of total reads
20077304
Reads aligned (%)
56.5
Duplicates removed (%)
30.5
Number of peaks
4678 (qval < 1E-05)

Base call quality data from DBCLS SRA