Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Neural
Cell type
Neural Stem Cells
MeSH Description
Self-renewing cells that generate the main phenotypes of the nervous system in both the embryo and adult. Neural stem cells are precursors to both NEURONS and NEUROGLIA.

Attributes by original data submitter

Sample

source_name
subventricular zone neural stem cells
strain
C57BL/6
gender
male
genotype/variation
WT
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

mm10

Number of total reads
37636362
Reads aligned (%)
84.9
Duplicates removed (%)
32.3
Number of peaks
39051 (qval < 1E-05)

mm9

Number of total reads
37636362
Reads aligned (%)
84.3
Duplicates removed (%)
32.1
Number of peaks
39001 (qval < 1E-05)

Base call quality data from DBCLS SRA