Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Digestive tract
Cell type
Hs 738.St/Int
Primary Tissue
Embryo
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
Gastric Cancer Line
tissue type
Hs 738.St/Int
chip antibody
H3K4Me3

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Pelleted cells and pulverized tissues were lysed in 100 µl 1% SDS lysis buffer and sonicated to 300-500bp using a Bioruptor (Diagenode). ChIPs were performed using the following antibodies: H3K4me3 (07-473, Millipore); H3K4me1 (ab8895, Abcam); H3K27ac (ab4729, Abcam); H3K36me3 (ab9050, Abcam); H3K27me3 (07-449, Millipore),EZH2 (# 5246, Cell Signaling) using same chromatin preparation.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
32275816
Reads aligned (%)
80.4
Duplicates removed (%)
19.0
Number of peaks
755 (qval < 1E-05)

hg19

Number of total reads
32275816
Reads aligned (%)
79.1
Duplicates removed (%)
19.9
Number of peaks
472 (qval < 1E-05)

Base call quality data from DBCLS SRA