Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Digestive tract
Cell type
HFE145
NA
NA

Attributes by original data submitter

Sample

source_name
Gastric Cancer Line
tissue type
HFE-145
chip antibody
Input

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Pelleted cells and pulverized tissues were lysed in 100 µl 1% SDS lysis buffer and sonicated to 300-500bp using a Bioruptor (Diagenode). ChIPs were performed using the following antibodies: H3K4me3 (07-473, Millipore); H3K4me1 (ab8895, Abcam); H3K27ac (ab4729, Abcam); H3K36me3 (ab9050, Abcam); H3K27me3 (07-449, Millipore),EZH2 (# 5246, Cell Signaling) using same chromatin preparation.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
18442666
Reads aligned (%)
99.1
Duplicates removed (%)
5.3
Number of peaks
414 (qval < 1E-05)

hg19

Number of total reads
18442666
Reads aligned (%)
98.6
Duplicates removed (%)
5.4
Number of peaks
248 (qval < 1E-05)

Base call quality data from DBCLS SRA