Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Uterus
Cell type
Carcinoma, Endometrioid
MeSH Description
An adenocarcinoma characterized by the presence of cells resembling the glandular cells of the ENDOMETRIUM. It is a common histological type of ovarian CARCINOMA and ENDOMETRIAL CARCINOMA. There is a high frequency of co-occurrence of this form of adenocarcinoma in both tissues.

Attributes by original data submitter

Sample

source_name
Tamoxifen-associated endometrial tumor H
tissue
endometrioid adenocarcinoma
chip antibody
ERa (SC-543; Santa Cruz)
procedure
Chromatin IP against ERa

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
23924152
Reads aligned (%)
55.8
Duplicates removed (%)
16.3
Number of peaks
848 (qval < 1E-05)

hg38

Number of total reads
23924152
Reads aligned (%)
57.2
Duplicates removed (%)
15.0
Number of peaks
761 (qval < 1E-05)

Base call quality data from DBCLS SRA