Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MEN1

Cell type

Cell type Class
Breast
Cell type
MCF 10A
Primary Tissue
Breast
Tissue Diagnosis
Fibrocystic Disease

Attributes by original data submitter

Sample

source_name
MCF-10A breast cancer cells
chip antibody
anti-Menin(MEN1) (A300-115A,Bethyl)
cell line
MCF

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were crosslinked, lysed in a buffer containing sarkosyl and sonicated. ThruPLEX-FD Prep kit, Rubicon Genomics

Sequencing Platform

instrument_model
NextSeq 500

hg19

Number of total reads
42390829
Reads aligned (%)
79.0
Duplicates removed (%)
12.9
Number of peaks
1631 (qval < 1E-05)

hg38

Number of total reads
42390829
Reads aligned (%)
83.3
Duplicates removed (%)
9.9
Number of peaks
2347 (qval < 1E-05)

Base call quality data from DBCLS SRA