Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MEN1

Cell type

Cell type Class
Breast
Cell type
T-47D
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by original data submitter

Sample

source_name
T47D breast cancer cells
chip antibody
anti-Menin(MEN1) (A300-115A,Bethyl)
cell line
T47D

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were crosslinked, lysed in a buffer containing sarkosyl and sonicated. ThruPLEX-FD Prep kit, Rubicon Genomics

Sequencing Platform

instrument_model
NextSeq 500

hg19

Number of total reads
55242963
Reads aligned (%)
81.2
Duplicates removed (%)
8.4
Number of peaks
1810 (qval < 1E-05)

hg38

Number of total reads
55242963
Reads aligned (%)
85.3
Duplicates removed (%)
5.6
Number of peaks
2881 (qval < 1E-05)

Base call quality data from DBCLS SRA