Curated Sample Data


Genome
hg19
Antigen Class
TFs and others
Antigen
MTOR
Cell type Class
Prostate
Cell type
LNCAP

Cell type information


Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by Original Data Submitter


source_name
LNCaP human prostate cancer cell line treated with vehicle for 48h
cell line
LNCaP prostate tumor cell line
treatment
control
chip antibody
mTOR

Metadata from Sequence Read Archive

Library Description


library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
After 48h treatment with vehicle or R1881 nuclei were isolated and subjected to chromatin immunoprecipitation. Following mTOR ChIP, genomic DNA was purified with QIAGEN DNA extraction kit. Libraries were performed at the Génome Québec Innovation Centre (McGill University) using standard protocol for HiSeq - Illumina Single reads 50bp sequencing lane

Platform Information


instrument_model
Illumina HiSeq 2000

External Database Query

Logs in read processing pipeline


Number of total reads
77104580
Reads aligned (%)
96.8
Duplicates removed (%)
8.5
Number of peaks
91568 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA