SRX250094
GSM1099032: TCF7L2 ChIP-seq, 16h DHT treatment; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TCF7L2

Cell type

Cell type Class
Breast
Cell type
MDA-MB-453
Primary Tissue
Breast
Site of Extraction
Effusion, Pericardial
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
TCF7L2 ChIP-seq, 16h DHT treatment
cell line
MDA-MB-453
cell type
breast cancer
chip antibody
sc-8631 Santa Cruz

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
30500106
Reads aligned (%)
96.3
Duplicates removed (%)
13.4
Number of peaks
3935 (qval < 1E-05)

hg19

Number of total reads
30500106
Reads aligned (%)
95.6
Duplicates removed (%)
14.3
Number of peaks
3767 (qval < 1E-05)

Base call quality data from DBCLS SRA