SRX250093
GSM1099031: FOXA1 ChIP-seq, 16h DHT treatment; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
FOXA1

Cell type

Cell type Class
Breast
Cell type
MDA-MB-453
Primary Tissue
Breast
Site of Extraction
Effusion, Pericardial
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
FOXA1 ChIP-seq, 16h DHT treatment
cell line
MDA-MB-453
cell type
breast cancer
chip antibody
ab23738 Abcam

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
143622799
Reads aligned (%)
40.2
Duplicates removed (%)
54.8
Number of peaks
91182 (qval < 1E-05)

hg38

Number of total reads
143622799
Reads aligned (%)
40.9
Duplicates removed (%)
54.2
Number of peaks
91694 (qval < 1E-05)

Base call quality data from DBCLS SRA