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For hg19
BigWig
Peak-call (q < 1E-05)
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For hg38
BigWig
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Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: FOXA1
wikigenes
PDBj
CellType: MDA-MB-453
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX250093
GSM1099031: FOXA1 ChIP-seq, 16h DHT treatment; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
FOXA1
Cell type
Cell type Class
Breast
Cell type
MDA-MB-453
Primary Tissue
Breast
Site of Extraction
Effusion, Pericardial
Tissue Diagnosis
Carcinoma
Attributes by original data submitter
Sample
source_name
FOXA1 ChIP-seq, 16h DHT treatment
cell line
MDA-MB-453
cell type
breast cancer
chip antibody
ab23738 Abcam
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
143622799
Reads aligned (%)
40.2
Duplicates removed (%)
54.8
Number of peaks
91182 (qval < 1E-05)
hg38
Number of total reads
143622799
Reads aligned (%)
40.9
Duplicates removed (%)
54.2
Number of peaks
91694 (qval < 1E-05)
Base call quality data from
DBCLS SRA