Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
AR

Cell type

Cell type Class
Breast
Cell type
MDA-MB-453
Primary Tissue
Breast
Site of Extraction
Effusion, Pericardial
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
AR ChIP-seq, 16h DHT treatment
cell line
MDA-MB-453
cell type
breast cancer
chip antibody
sc-816 Santa Cruz

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
149360627
Reads aligned (%)
56.4
Duplicates removed (%)
38.4
Number of peaks
56848 (qval < 1E-05)

hg38

Number of total reads
149360627
Reads aligned (%)
57.7
Duplicates removed (%)
37.4
Number of peaks
57402 (qval < 1E-05)

Base call quality data from DBCLS SRA