SRX250091
GSM1099029: MYC ChIP-seq, 6h DHT treatment; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MYC

Cell type

Cell type Class
Breast
Cell type
MDA-MB-453
Primary Tissue
Breast
Site of Extraction
Effusion, Pericardial
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
MYC ChIP-seq, 6h DHT treatment
cell line
MDA-MB-453
cell type
breast cancer
chip antibody
sc-764 Santa Cruz

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
221767147
Reads aligned (%)
78.3
Duplicates removed (%)
49.6
Number of peaks
47822 (qval < 1E-05)

hg19

Number of total reads
221767147
Reads aligned (%)
77.9
Duplicates removed (%)
50.5
Number of peaks
47390 (qval < 1E-05)

Base call quality data from DBCLS SRA