SRX2500400
GSM2460980: CGN input; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Neural
Cell type
Cerebellar granule neurons
NA
NA

Attributes by original data submitter

Sample

source_name
Cerebellar granule neuron
strain
C57BL/6
developmental stage
P7
tissue
granule neuron
antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were fixed with formadehyde. Lysates were sonicated and precipitated with antibody.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
36320856
Reads aligned (%)
98.7
Duplicates removed (%)
12.0
Number of peaks
263 (qval < 1E-05)

mm9

Number of total reads
36320856
Reads aligned (%)
98.6
Duplicates removed (%)
11.9
Number of peaks
223 (qval < 1E-05)

Base call quality data from DBCLS SRA