Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Cardiovascular
Cell type
Cardiomyocytes
NA
NA

Attributes by original data submitter

Sample

source_name
cardiomyocyte
strain
C57BL/6J
chip antibody
none
treatment
transverse aortic constriction (TAC) for 1 week

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP was performed as described elsewhere (Peters AH, et al. (2003) Mol Cell 12(6):1577–1589). The Libraries were generated using NuGEN Ovation Ultralow System V2 1–96 kit. ChIP-seq libraries were produced from as little as 1 ng of double-stranded DNA. The workflow is consisted of three steps: end repair to generate blunt ends, adaptor ligation with optional multiplexing and PCR amplification to produce the final library.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
18485607
Reads aligned (%)
94.5
Duplicates removed (%)
4.6
Number of peaks
190 (qval < 1E-05)

mm9

Number of total reads
18485607
Reads aligned (%)
94.4
Duplicates removed (%)
4.5
Number of peaks
160 (qval < 1E-05)

Base call quality data from DBCLS SRA