SRX2495309
GSM2459952: Input-2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Digestive tract
Cell type
Colorectal adenocarcinoma
NA
NA

Attributes by original data submitter

Sample

source_name
colon tumor cells
cell type
colorectal adenocarcinoma
derivation
Isolated from primary tumor
chip antibodies
N/A

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
RNA libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
29025727
Reads aligned (%)
94.0
Duplicates removed (%)
5.4
Number of peaks
2522 (qval < 1E-05)

hg19

Number of total reads
29025727
Reads aligned (%)
92.4
Duplicates removed (%)
7.6
Number of peaks
2504 (qval < 1E-05)

Base call quality data from DBCLS SRA