Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Digestive tract
Cell type
Colorectal adenocarcinoma
NA
NA

Attributes by original data submitter

Sample

source_name
colon tumor cells
cell type
colorectal adenocarcinoma
derivation
Isolated from primary tumor
chip antibodies
N/A

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
RNA libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
16288307
Reads aligned (%)
91.8
Duplicates removed (%)
4.8
Number of peaks
1053 (qval < 1E-05)

hg19

Number of total reads
16288307
Reads aligned (%)
90.3
Duplicates removed (%)
6.4
Number of peaks
1028 (qval < 1E-05)

Base call quality data from DBCLS SRA