Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
prostate cancer cells
cell line
LNCaP
treatment
R1881 10 nM treatment
chip antibody
input

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
51695514
Reads aligned (%)
69.1
Duplicates removed (%)
7.1
Number of peaks
2286 (qval < 1E-05)

hg19

Number of total reads
51695514
Reads aligned (%)
67.5
Duplicates removed (%)
9.9
Number of peaks
1925 (qval < 1E-05)

Base call quality data from DBCLS SRA