SRX248894
GSM1097496: PSF Vehicle ChIP; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SFPQ

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
prostate cancer cells
cell line
LNCaP
treatment
ethanol (Vehicle) treatment
chip antibody
PSF

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
37046854
Reads aligned (%)
81.0
Duplicates removed (%)
3.9
Number of peaks
784 (qval < 1E-05)

hg19

Number of total reads
37046854
Reads aligned (%)
80.3
Duplicates removed (%)
5.1
Number of peaks
1042 (qval < 1E-05)

Base call quality data from DBCLS SRA