SRX248769
GSM1095936: UBN1 ChIP; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RB1

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
UBN1 ChIP
cell type
HeLa
chip antibody
Rb pAb UBN1-1358 (Banumathy et al., 2009)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
34344609
Reads aligned (%)
97.4
Duplicates removed (%)
22.6
Number of peaks
4887 (qval < 1E-05)

hg19

Number of total reads
34344609
Reads aligned (%)
96.9
Duplicates removed (%)
23.6
Number of peaks
4932 (qval < 1E-05)

Base call quality data from DBCLS SRA