Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HIRA

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HIRA ChIP
cell type
HeLa
chip antibody
equimolar mixture of Ms mAbs WC15, WC19, WC117, WC 119 (Hall et al., 2001)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
27524520
Reads aligned (%)
73.6
Duplicates removed (%)
38.4
Number of peaks
1128 (qval < 1E-05)

hg19

Number of total reads
27524520
Reads aligned (%)
73.1
Duplicates removed (%)
39.4
Number of peaks
1106 (qval < 1E-05)

Base call quality data from DBCLS SRA