SRX248397
GSM1090064: KLF3, input; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
Klf3-/- murine embryonic fibroblasts, rescued with Klf3-V5
strain
C57BL/6
cell type
MEFs
genotype/variation
Klf3-/- rescued with Klf3-V5
antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
163143447
Reads aligned (%)
97.1
Duplicates removed (%)
54.3
Number of peaks
834 (qval < 1E-05)

mm9

Number of total reads
163143447
Reads aligned (%)
96.6
Duplicates removed (%)
54.2
Number of peaks
1063 (qval < 1E-05)

Base call quality data from DBCLS SRA