Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Others
Cell type
Cornea
MeSH Description
The transparent anterior portion of the fibrous coat of the eye consisting of five layers: stratified squamous CORNEAL EPITHELIUM; BOWMAN MEMBRANE; CORNEAL STROMA; DESCEMET MEMBRANE; and mesenchymal CORNEAL ENDOTHELIUM. It serves as the first refracting medium of the eye. It is structurally continuous with the SCLERA, avascular, receiving its nourishment by permeation through spaces between the lamellae, and is innervated by the ophthalmic division of the TRIGEMINAL NERVE via the ciliary nerves and those of the surrounding conjunctiva which together form plexuses. (Cline et al., Dictionary of Visual Science, 4th ed)

Attributes by original data submitter

Sample

source_name
mouse corneal epithelium
strain
C57BL/6
genotype/variation
wild type
tissue
corneal epithelium
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
79412365
Reads aligned (%)
71.0
Duplicates removed (%)
13.8
Number of peaks
1439 (qval < 1E-05)

mm9

Number of total reads
79412365
Reads aligned (%)
70.9
Duplicates removed (%)
13.8
Number of peaks
1536 (qval < 1E-05)

Base call quality data from DBCLS SRA