Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ERCC2

Cell type

Cell type Class
Bone
Cell type
HT-1080
Primary Tissue
Bone
Tissue Diagnosis
Fibrosarcoma

Attributes by original data submitter

Sample

source_name
HT1080_XPD_ChIP_Seq
cell line
HT1080
cell type
Fibrosarcoma cells
chip antibody
Rabbit Polyclonal anti-XPD
chip antibody vendor
Santa Cruz Biotechnology

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
77722721
Reads aligned (%)
106.5
Duplicates removed (%)
14.9
Number of peaks
2279 (qval < 1E-05)

hg38

Number of total reads
77722721
Reads aligned (%)
107.3
Duplicates removed (%)
14.7
Number of peaks
2586 (qval < 1E-05)

Base call quality data from DBCLS SRA