SRX246863
GSM1089820: MDA231 H3K4 input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
MDA-MB-231
Primary Tissue
Breast
Site of Extraction
Effusion, Pleural
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MDA231_H3K4_input
cell line
MDA231
antibody
none, input

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
10950339
Reads aligned (%)
59.1
Duplicates removed (%)
51.8
Number of peaks
283 (qval < 1E-05)

hg19

Number of total reads
10950339
Reads aligned (%)
58.3
Duplicates removed (%)
52.9
Number of peaks
296 (qval < 1E-05)

Base call quality data from DBCLS SRA