SRX246862
GSM1089819: MDA231 MBD3; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MBD3

Cell type

Cell type Class
Breast
Cell type
MDA-MB-231
Primary Tissue
Breast
Site of Extraction
Effusion, Pleural
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MDA231_MBD3
cell line
MDA231
antibody
anti-MBD3 antibody (Abcam; ab91458)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina MiSeq

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
42681733
Reads aligned (%)
95.6
Duplicates removed (%)
5.1
Number of peaks
1017 (qval < 1E-05)

hg19

Number of total reads
42681733
Reads aligned (%)
94.9
Duplicates removed (%)
6.3
Number of peaks
1224 (qval < 1E-05)

Base call quality data from DBCLS SRA