Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
MDA-MB-231
Primary Tissue
Breast
Site of Extraction
Effusion, Pleural
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MDA231_MBD3_input
cell line
MDA231
antibody
none, input

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
34042906
Reads aligned (%)
96.3
Duplicates removed (%)
5.8
Number of peaks
638 (qval < 1E-05)

hg19

Number of total reads
34042906
Reads aligned (%)
95.5
Duplicates removed (%)
6.7
Number of peaks
908 (qval < 1E-05)

Base call quality data from DBCLS SRA