SRX246860
GSM1089817: MCF-7 MBD3; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MBD3

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF-7_MBD3
cell line
MCF-7
antibody
anti-MBD3 antibody (Abcam; ab91458)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
70619440
Reads aligned (%)
93.7
Duplicates removed (%)
15.0
Number of peaks
972 (qval < 1E-05)

hg19

Number of total reads
70619440
Reads aligned (%)
92.9
Duplicates removed (%)
16.3
Number of peaks
947 (qval < 1E-05)

Base call quality data from DBCLS SRA