SRX246079
GSM1089631: Input DNA [PDNC4 cell line]; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Others
Cell type
PDNC-4
NA
NA

Attributes by original data submitter

Sample

GEO Accession
GSM1089631
cell type
Fibroblast
chip antibody
None
cell line
PDNC4

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
62841550
Reads aligned (%)
95.3
Duplicates removed (%)
8.6
Number of peaks
1633 (qval < 1E-05)

hg19

Number of total reads
62841550
Reads aligned (%)
94.2
Duplicates removed (%)
9.9
Number of peaks
616 (qval < 1E-05)

Base call quality data from DBCLS SRA