SRX246078
GSM1089630: CENP-A ChIP-seq [MS4221 cell line]; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
CENPA

Cell type

Cell type Class
Blood
Cell type
MS4221
NA
NA

Attributes by original data submitter

Sample

GEO Accession
GSM1089630
cell type
Lymphoblast
chip antibody
CENP-A (Abcam, ab13939)
cell line
MS4221

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
49100238
Reads aligned (%)
96.7
Duplicates removed (%)
36.2
Number of peaks
10681 (qval < 1E-05)

hg19

Number of total reads
49100238
Reads aligned (%)
86.3
Duplicates removed (%)
62.7
Number of peaks
605 (qval < 1E-05)

Base call quality data from DBCLS SRA