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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: CENPA
wikigenes
PDBj
CellType: PDNC-4
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX246076
GSM1089628: CENP-A ChIP-seq [PDNC4 cell line]; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
CENPA
Cell type
Cell type Class
Others
Cell type
PDNC-4
NA
NA
Attributes by original data submitter
Sample
GEO Accession
GSM1089628
cell type
Fibroblast
chip antibody
CENP-A (Abcam, ab13939)
cell line
PDNC4
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
81938934
Reads aligned (%)
96.4
Duplicates removed (%)
25.9
Number of peaks
10757 (qval < 1E-05)
hg19
Number of total reads
81938934
Reads aligned (%)
89.2
Duplicates removed (%)
46.5
Number of peaks
744 (qval < 1E-05)
Base call quality data from
DBCLS SRA