SRX246029
GSM1089269: WT HCP4 FCL (20120817 3 4); Caenorhabditis elegans; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
hcp-4

Cell type

Cell type Class
Embryo
Cell type
Embryos
NA
NA

Attributes by original data submitter

Sample

source_name
crosslinked ChIPed chromatin
tissue
embryo
genetic background
N2
genotype
WT
chip antibody
CENP-C

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

ce11

Number of total reads
109996620
Reads aligned (%)
80.5
Duplicates removed (%)
82.5
Number of peaks
1677 (qval < 1E-05)

ce10

Number of total reads
109996620
Reads aligned (%)
80.5
Duplicates removed (%)
82.5
Number of peaks
1674 (qval < 1E-05)

Base call quality data from DBCLS SRA