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Install and launch IGV before selecting data to visualize
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For ce11
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For ce10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: GFP
wikigenes
PDBj
CellType: L1
ATCC
MeSH
RIKEN BRC
SRX245914
GSM1089225: NHR-25 ChIP input repA; Caenorhabditis elegans; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
GFP
Cell type
Cell type Class
Larvae
Cell type
L1
NA
NA
Attributes by original data submitter
Sample
source_name
embryonic stage
strain
N2
Stage
Fed L1
antibody
anti-GFP (polyclonal goat IgG; produced in Hyman lab)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
ce11
Number of total reads
21734004
Reads aligned (%)
91.6
Duplicates removed (%)
8.3
Number of peaks
0 (qval < 1E-05)
ce10
Number of total reads
21734004
Reads aligned (%)
91.6
Duplicates removed (%)
8.3
Number of peaks
0 (qval < 1E-05)
Base call quality data from
DBCLS SRA