SRX245912
GSM1089223: NHR-25 ChIP repA; Caenorhabditis elegans; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GFP

Cell type

Cell type Class
Larvae
Cell type
L1
NA
NA

Attributes by original data submitter

Sample

source_name
embryonic stage
strain
N2
Stage
Fed L1
antibody
anti-GFP (polyclonal goat IgG; produced in Hyman lab)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

ce11

Number of total reads
17073633
Reads aligned (%)
73.2
Duplicates removed (%)
7.2
Number of peaks
849 (qval < 1E-05)

ce10

Number of total reads
17073633
Reads aligned (%)
73.2
Duplicates removed (%)
7.2
Number of peaks
848 (qval < 1E-05)

Base call quality data from DBCLS SRA