SRX245511
GSM1088172: Plasmablast Input; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
Plasmablasts
NA
NA

Attributes by original data submitter

Sample

source_name
splenic Plasmablasts
chip antibody
none
cell type
splenic Plasmablasts
strain
C57BL/6
cell surface markers
CD138+
cell isolation
Plasmablasts were induced by injecting 6-week old mice with 50 ug LPS retro-orbitally. 3 days post-injection spleens were harvested and plasmablasts purified by flow cytometry based on surface expression of CD138.

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
84439963
Reads aligned (%)
97.2
Duplicates removed (%)
49.3
Number of peaks
958 (qval < 1E-05)

mm9

Number of total reads
84439963
Reads aligned (%)
97.0
Duplicates removed (%)
49.3
Number of peaks
972 (qval < 1E-05)

Base call quality data from DBCLS SRA