SRX245509
GSM1088170: B cell Input; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
splenic B cells
chip antibody
none
cell type
splenic B cells
strain
C57BL/6
cell surface markers
CD43-
cell isolation
B cells were purified from the spleens of 6-week old mice using a magnetic bead based CD43- B cell Isolation Kit (Miltenyi).

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
39488987
Reads aligned (%)
91.3
Duplicates removed (%)
65.4
Number of peaks
17916 (qval < 1E-05)

mm9

Number of total reads
39488987
Reads aligned (%)
90.2
Duplicates removed (%)
65.2
Number of peaks
17945 (qval < 1E-05)

Base call quality data from DBCLS SRA