SRX2442441
GSM2439182: Patient 3 NOTCH ChIP-seq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NOTCH1

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPSC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
hiPSC derived NPC_SCZD patient
biomaterial_provider
CC
source subject status
SCHIZOPHRENIA; SCZD
cell type
iPSC derived NPC
treated with
neuronal media for 2 days
chip antibody
NOTCH (obtained from Dr. Jon C. Aster)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
lysate was sonicated and protein-genomic DNA complex were isolated with antibody Libraries were prepared according to standard Illumina protocols

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
34700795
Reads aligned (%)
98.0
Duplicates removed (%)
76.9
Number of peaks
6547 (qval < 1E-05)

hg19

Number of total reads
34700795
Reads aligned (%)
97.7
Duplicates removed (%)
77.5
Number of peaks
6557 (qval < 1E-05)

Base call quality data from DBCLS SRA