SRX244180
GSM1085735: MM1.S CDK9 DMSO; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CDK9

Cell type

Cell type Class
Blood
Cell type
MM.1S
Primary Tissue
Blood
Tissue Diagnosis
Multiple Myeloma

Attributes by original data submitter

Sample

source_name
Multiple myeloma
cell type
MM1.S
treated with
0.05% DMSO for 6h
chip antibody
Cdk9
chip antibody vendor
Santa Cruz

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
33225971
Reads aligned (%)
80.6
Duplicates removed (%)
20.9
Number of peaks
25638 (qval < 1E-05)

hg19

Number of total reads
33225971
Reads aligned (%)
80.2
Duplicates removed (%)
21.5
Number of peaks
25545 (qval < 1E-05)

Base call quality data from DBCLS SRA