Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Epidermis
Cell type
Keratinocytes
MeSH Description
Epidermal cells which synthesize keratin and undergo characteristic changes as they move upward from the basal layers of the epidermis to the cornified (horny) layer of the skin. Successive stages of differentiation of the keratinocytes forming the epidermal layers are basal cell, spinous or prickle cell, and the granular cell.

Attributes by original data submitter

Sample

GEO Accession
GSM1084550
cell type
ketatinocytes
modification
Transduced with HA:macroH2A.1 expressing lentivirus
antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
39821109
Reads aligned (%)
80.7
Duplicates removed (%)
3.4
Number of peaks
1269 (qval < 1E-05)

hg19

Number of total reads
39821109
Reads aligned (%)
79.9
Duplicates removed (%)
5.1
Number of peaks
1409 (qval < 1E-05)

Base call quality data from DBCLS SRA