Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
embryonic stem cells
cell type
ESCs
cell line of origin
Rosa-26 M2rtTA; ColA1-FRT ESCs
chip antibody
IgG (normal rabbit)
treatment
Lif 2i and doxycycline

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was extracted using a standard ChIP protocol Library was constructed using a standard Illumina protocol ChIP-seq, ATAC-seq

Sequencing Platform

instrument_model
Illumina HiSeq 4000

mm10

Number of total reads
33222676
Reads aligned (%)
93.6
Duplicates removed (%)
30.5
Number of peaks
532 (qval < 1E-05)

mm9

Number of total reads
33222676
Reads aligned (%)
93.3
Duplicates removed (%)
30.5
Number of peaks
563 (qval < 1E-05)

Base call quality data from DBCLS SRA