SRX2440062
GSM2436780: ColFRT ESC IgG rep1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
embryonic stem cells
cell type
ESCs
cell line of origin
Rosa-26 M2rtTA; ColA1-FRT ESCs
chip antibody
IgG (normal rabbit)
treatment
Lif 2i and doxycycline

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was extracted using a standard ChIP protocol Library was constructed using a standard Illumina protocol ChIP-seq, ATAC-seq

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
17991556
Reads aligned (%)
95.8
Duplicates removed (%)
23.1
Number of peaks
417 (qval < 1E-05)

mm9

Number of total reads
17991556
Reads aligned (%)
95.5
Duplicates removed (%)
23.2
Number of peaks
439 (qval < 1E-05)

Base call quality data from DBCLS SRA