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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: EpiSC
ATCC
MeSH
RIKEN BRC
SRX2440043
GSM2436761: WT EpiC IgG rep2; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Pluripotent stem cell
Cell type
EpiSC
NA
NA
Attributes by original data submitter
Sample
source_name
epiblast cells
cell type
EpiCs
cell line of origin
V6.5 ESCs
chip antibody
IgG (normal rabbit)
treatment
-Lif -2i day 3
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was extracted using a standard ChIP protocol Library was constructed using a standard Illumina protocol ChIP-seq, ATAC-seq
Sequencing Platform
instrument_model
Illumina HiSeq 4000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
30145376
Reads aligned (%)
97.7
Duplicates removed (%)
24.9
Number of peaks
487 (qval < 1E-05)
mm9
Number of total reads
30145376
Reads aligned (%)
97.4
Duplicates removed (%)
24.9
Number of peaks
521 (qval < 1E-05)
Base call quality data from
DBCLS SRA