Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
EpiSC
NA
NA

Attributes by original data submitter

Sample

source_name
epiblast cells
cell type
EpiCs
cell line of origin
V6.5 ESCs
chip antibody
IgG (normal rabbit)
treatment
-Lif -2i day 3

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was extracted using a standard ChIP protocol Library was constructed using a standard Illumina protocol ChIP-seq, ATAC-seq

Sequencing Platform

instrument_model
Illumina HiSeq 4000

mm10

Number of total reads
30145376
Reads aligned (%)
97.7
Duplicates removed (%)
24.9
Number of peaks
487 (qval < 1E-05)

mm9

Number of total reads
30145376
Reads aligned (%)
97.4
Duplicates removed (%)
24.9
Number of peaks
521 (qval < 1E-05)

Base call quality data from DBCLS SRA