SRX2440042
GSM2436760: WT EpiC IgG rep1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
EpiSC
NA
NA

Attributes by original data submitter

Sample

source_name
epiblast cells
cell type
EpiCs
cell line of origin
V6.5 ESCs
chip antibody
IgG (normal rabbit)
treatment
-Lif -2i day 3

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was extracted using a standard ChIP protocol Library was constructed using a standard Illumina protocol ChIP-seq, ATAC-seq

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
39286868
Reads aligned (%)
92.0
Duplicates removed (%)
28.1
Number of peaks
581 (qval < 1E-05)

mm9

Number of total reads
39286868
Reads aligned (%)
91.7
Duplicates removed (%)
28.1
Number of peaks
643 (qval < 1E-05)

Base call quality data from DBCLS SRA