SRX2438808
GSM2436023: WT - ChIP Tcf1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Tcf7

Cell type

Cell type Class
Blood
Cell type
Natural killer cells
NA
NA

Attributes by original data submitter

Sample

source_name
IL-2 activated Splenic NK cells, Tcf7+/+
strain
B6
cell type
IL-2 activated NK cells
genotype
Tcf7+/+
antibody
Tcf1

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was purified using the MinElute PCR purification kit (Qiagen) NEBNext Chip-Seq library Preparation from New England BioLabs size selection to keep the inserts between 100bp and 400 bp

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
54566648
Reads aligned (%)
92.2
Duplicates removed (%)
28.6
Number of peaks
539 (qval < 1E-05)

mm9

Number of total reads
54566648
Reads aligned (%)
92.0
Duplicates removed (%)
28.6
Number of peaks
586 (qval < 1E-05)

Base call quality data from DBCLS SRA