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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Unclassified
wikigenes
PDBj
CellType: Natural killer cells
ATCC
MeSH
RIKEN BRC
SRX2438807
GSM2436022: WT - Input; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Unclassified
Antigen
Unclassified
Cell type
Cell type Class
Blood
Cell type
Natural killer cells
NA
NA
Attributes by original data submitter
Sample
source_name
IL-2 activated Splenic NK cells, Tcf7+/+
strain
B6
cell type
IL-2 activated NK cells
genotype
Tcf7+/+
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was purified using the MinElute PCR purification kit (Qiagen) NEBNext Chip-Seq library Preparation from New England BioLabs size selection to keep the inserts between 100bp and 400 bp
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
75838785
Reads aligned (%)
95.9
Duplicates removed (%)
22.8
Number of peaks
576 (qval < 1E-05)
mm9
Number of total reads
75838785
Reads aligned (%)
95.7
Duplicates removed (%)
22.7
Number of peaks
675 (qval < 1E-05)
Base call quality data from
DBCLS SRA