Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
L-428
Primary Tissue
Blood
Tissue Diagnosis
Hodgkin's Lymphoma

Attributes by original data submitter

Sample

source_name
Hodgkin lymphoma cell line
cell line
L428-PAX5
treatment
Mifepristone
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
62316450
Reads aligned (%)
69.7
Duplicates removed (%)
7.9
Number of peaks
919 (qval < 1E-05)

hg19

Number of total reads
62316450
Reads aligned (%)
69.2
Duplicates removed (%)
8.9
Number of peaks
1154 (qval < 1E-05)

Base call quality data from DBCLS SRA